Portfolio

Projects

Congresses and conferences

Publications



Projects

Impact and technological development projects planned, developed, and successfully implemented by Bioalgoritmia.

|CONABIO's logo |
National Commission for the Knowledge and Use of Biodiversity (CONABIO) (in progress))

The CONABIO is an intersecretarial commission composed of 10 ministries of the Mexican government. Its mission is to promote, coordinate, support, and carry out activities aimed at understanding biological diversity, as well as its conservation and sustainable use for the benefit of society. Bioalgoritmia was selected as a consultant for the design and development of the software for the Monitoring, Evaluation, and Participatory Learning (MEAP) system of the AgroecoBio-Mx project, which promotes the integration of biodiversity into rural productive activities in Mexico, in collaboration with the Ministry of Agriculture and Rural Development, CONABIO, and the French Development Agency (AFD).

|Map of the city with the containers marked |
Municipal Government of Villaflores, Chiapas, Mexico

Waste management is a complex issue that presents multiple challenges throughout its cycle. In order to optimize the first stage (collection) and as part of an integrated plan, Bioalgoritmia managed the geolocation of every waste container in the city and then applied unsupervised machine learning algorithms based on spatial proximity criteria. Finally, optimal collection routes were proposed for each group, taking into account the location of the landfill through metaheuristic algorithms. As a result, each container is serviced while minimizing the distance traveled by each collection truck.


Conferences and presentations

Participation in high-level congresses, academic conferences, and outreach events.

International Conference on Philosophy of Computing 2025

Salvador at the congress

This five-day academic event (October 27–31, 2025) is dedicated to promoting cutting-edge research at the intersection of computing and philosophy — a dialogue that has never been more urgent. In an era marked by rapid technological transformation, the ethical challenges of artificial intelligence, and the growing impact of computational systems on all aspects of society, there is a pressing need for spaces of critical reflection and rigorous debate. As computing continues to redefine our institutions, economies, modes of research, and even our understanding of knowledge and existence, this conference seeks to foster deep interdisciplinary engagement with the philosophical implications and responsibilities of life in the digital age.

Salvador Garcilita, founder of Bioalgoritmia, gave a talk on dual transition during the session “Computing, Society, and Alternative Futures,” which explored the motivations, challenges, and opportunities of integrating digital technologies, computing, and frontier algorithms into efforts to address the current socio-environmental crisis — aiming to merge the digital and green transformations into one: a dual transition.

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Mexican conference on Pattern Recognition 2025

Agenda of the conference

The Mexican Conference on Pattern Recognition (MCPR) is an annual academic event that brings together researchers, professionals, and students from Mexico and around the world who are interested in pattern recognition and related fields. It covers a wide range of topics, including computer vision, machine learning, neural networks, image processing, and data analysis. The conference is organized by Mexican academic institutions in collaboration with the National Institute of Astrophysics, Optics, and Electronics (INAOE), the International Association for Pattern Recognition (IAPR), and the Mexican Association for Computer Vision, Neurocomputing, and Robotics (MACVNR). It is internationally recognized as a high-quality conference.

In the 2025 edition, held at the Center for Research in Mathematics (CIMAT) in Guanajuato, Mexico, Salvador Garcilita (founder) and Edgar Román (associate researcher) presented the paper *“Determining Optimal Population Management With Reinforcement Learning.”* This work contributed to the “Reinforcement Learning” and Artificial Intelligence themes, exploring the use of these techniques to simulate ecologically relevant scenarios and support decision-making.

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Regional Forum on Digital Transformation 2023

The Ministry of Economy and the German Agency for International Cooperation for Sustainable Development (GIZ, by its German acronym) organized the Regional Forum on Digital Transformation in May 2023. The forum aimed to create a collaborative space to connect diverse actors within the digital and innovation ecosystem and to highlight innovative solutions that emphasize the value of digital transformation for the benefit of society, the economy, and the environment in the Latin American region. The event brought together nearly 6,000 participants from five Latin American countries representing the public and private sectors, academia, and civil society.

During the event, Salvador Garcilita, founder of Bioalgoritmia and then advisor at GIZ, delivered a talk titled *“Digital Transformation for Biodiversity”* at the Ministry of Economy’s auditorium. In his presentation, he highlighted opportunities for interdisciplinary collaboration between biology, computing, and other fields of knowledge, emphasizing their application in cooperation projects seeking greater impact on environmental issues.

Learn more.


Publications

Research articles, technical reports, and outreach documents published by scientists associated with Bioalgoritmia.

Front page of the work
Digital transformation, access, and integrated use of information: recommendations for promoting and sustainably modernizing agriculture.

Summary:

The document analyzes digital transformation in Mexico’s agricultural sector, emphasizing its relevance for improving sustainability, climate resilience, and institutional efficiency in rural areas. Divided into two sections, the first addresses key concepts of digitalization, digital divides, regional strategies, and available digital tools, while the second explores specific technologies such as artificial intelligence, the Internet of Things, blockchain, cloud computing, and software development applied to agriculture. It also presents recommendations for implementing digital solutions that facilitate access to information, promote social inclusion, and strengthen the integration of information systems in agricultural production and marketing.

  • Cite: Núñez-Ramírez, R., Garcilita-Arguello, S. (2025). Transformación digital, acceso y uso integrado de información Recomendaciones para el impulso y la modernización sostenible de la agricultura. Deutsche Gesellschaft für Internationale Zusammenarbeit (GIZ) GmbH.
Graphic of the results
Determining Optimal Population Management with Reinforcement Learning.

Summary:

Reinforcement learning is a promising artificial maximizes a particular reward by mapping states to actions in a non-deterministic environment, intelligence area which relies on computational simulations where an agent finds a policy that applications in optimization problems. Here, we apply Q-learning, a popular model-free with learning algorithm to a representative ecological problem: the sustainable harvest of a reinforcement which follows a logistic growth rate by modeling it as a valid python gymnasium environment, population contributing to the generation of new environments which represent real-world situations and may lead to decision making. We implemented three different scenarios in which the agents determined an optimal policy guided by different reward signals: a greedy agent, which harvests as much as possible; a conscious agent, which seeks to harvest as much as possible while maintaining high population numbers; and a biocentric agent, which harvests only what is needed to avoid the population to exceed the carrying capacity of the environment. By initializing the population size to 100, with a growth rate of 1 and a carrying capacity of 200, the biocentric agent had the largest accumulated harvest, suggesting that a sustainable strategy is more profitable in the long term. Reinforcement learning is a very promising approach for decision making in many ecological real-world situations, where population management is a very straightforward application.

  • Cite: Garcilita-Arguello, S., Roman-Rangel, E. (2025). Determining Optimal Population Management with Reinforcement Learning. In: López-Monroy, A.P., Rosales-Pérez, A., Carrasco-Ochoa, J.A., Martínez-Trinidad, J.F., Olvera-López, J.A. (eds) Pattern Recognition. MCPR 2025. Lecture Notes in Computer Science, vol 15715. Springer, Cham. https://doi.org/10.1007/978-3-031-96255-4_29.
Graphic of the results
Mapping causal networks from theories of change in sustainability projects: a software co-design process

Summary:

Envisioning trajectories towards sustainability encompasses enacting significant changes in multiple spheres (i.e., infrastructure, policy, practices, behaviors). These changes unfold within the intricate landscapes of wicked problems, where diverse perspectives and potential solutions intersect and often clash. Advancing more equitable and sustainable trajectories demands recognition of and collaboration with diverse voices to uncover meaningful synergies among groups striving to catalyze substantial change. Projects of this nature necessitate the exploration of varied tools and methodologies to elicit, convey, and integrate ideas effectively. Creating spaces for reflexivity is essential for catalyzing more meaningful impact as individuals engage in discussions aimed at sharing and questioning the coherence of their projects while forging synergies, identifying common objectives, and planning long-term outcomes. We present the initial phase of an endeavor in which we developed a software that elicits causal networks based on mapping relations between projects’ actions and outcomes. To illustrate our approach, we describe the results of using this software within collaborative workshops with groups spearheading projects initiated by a government entity in Mexico City. By adapting elements of the Theory of Change model, this software transcends the dominant linear project logic by guiding participants in designing causation networks that unveil how different projects can articulate to identify potential common elements and find new possibilities for coordination among initiatives. We discuss the potential of such software application as a dynamic tool to guide and promote reflection and coherence when crafting projects that aim to more meaningfully address sustainability problems.

  • Cite: García Meneses, Paola & Garcia-Herrera, Rodrigo & Serrano-Candela, Fidel & Charli-Joseph, Lakshmi & Mota-Nieto, Jazmin & Mejía-Ciro, Juan & Platas-Valle, Elisa & Garcilita Argüello, Salvador & Fernández-Reyes, Adrian & Cruz, A. (2024). Mapping causal networks from theories of change in sustainability projects: a software co-design process. Frontiers in Sustainability. 5. 10.3389/frsus.2024.1405501.
Graphic of the results
Tracing impact through intersectoral nets

Summary: Opinion article on the concept of impact and its relationship with cooperation and development projects.

  • Cite: Garcilita, S. (2023). Tracing impact through intersectoral nets. In: Plataforma Mexicana de Captura y Almacenamiento de CO₂ (2023). Gaceta Punto Crítico No.5 (mayo-junio 2023) / Newsletter Punto Crítico No.5 (May-June 2023) (0.0.1).
Front page of the work
Relational database model for monitoring and decision-making in Protected Natural Areas

Summary:

This document (and its attached files) represents an effort to create a database for the Central and Neovolcanic Axis Regional Directorate (DRCEN) of the National Commission of Natural Protected Areas (CONANP) in Mexico. The result is a proposal for a maintainable relational database designed to support effective, data- and evidence-based decision-making, as well as the generation of outputs such as reports, dashboards, and visualizations. It was developed by Salvador Garcilita (founder of Bioalgoritmia) during his tenure as an advisor for the German Development Cooperation (GIZ).

  • Cite: Garcilita, S. (2022). Modelo de base de datos relacional para el monitoreo y toma de decisiones en áreas naturales protegidas. Deutsche Gesellschaft für Internationale Zusammenarbeit (GIZ) GmbH.